Connected subfeatures.

[Thys3Potgieter]

Dear community

I am trying to visualize blastn results using a custom gff3 file with structure ID=match for blast alignments, and Parent=match for aligned segments.

This doesnt follow the Gene/CDS/expon schema, and my groups dont have connecting lines. Any advice will be appreciated , to force connecting lines in config.json, please :)

I have found details on how to do this for jbrowse 1:

(https://jbrowse.org/docs/faq_troubleshooting.html)

But not for jbrowse2.

Here is my current visualization:

My current config looks like this:
"displays": [ { "type": "LinearBasicDisplay", "displayId": "S5527_GCA_000008585.1_orfs_sorted.gff3-LinearBasicDisplay", "renderer": { "type": "SvgFeatureRenderer", "color1": "goldenrod", "height": 10, "showLabels": true, "strokeWidth": "\n jexl:cast({\n true: 3, # Thicker outline for acetylated peptides\n false: 1 # Thinner outline for non-acetylated peptides\n })[get(feature,'nterm_acetylated')]\n ", "showDescriptions": false } }, { "type": "LinearArcDisplay", "displayId": "S5527_GCA_000008585.1_orfs_sorted.gff3-LinearArcDisplay" } ],

My JBROWSE version is:
@jbrowse/cli/2.13.0 linux-x64 node-v20.5.1

Thank you!