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Tracks menu display problems when using tabix + canvasFeatures for bed files #2571

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mpoelchau opened this issue Feb 12, 2021 · 2 comments
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@mpoelchau
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Apollo version: 2.1.1-SNAPSHOT
Jbrowse version: 1.16.9

We are working on setting up bed tracks using tabix and canvasFeatures (see GMOD/jbrowse#1511 for background). The display works fine for Jbrowse 1.16.9. In Apollo, the 'Tracks' menu in the right hand Apollo panel does not load.

staging-apollo

We get the following Javascript console error when logging on to Apollo, when turning on any tracks (via the Jbrowse-style track menu), and/or when selecting the 'Tracks' menu in the right hand Apollo panel. I don't get the errors when I remove the bed tracks from trackList.json.

js-console-log

Server log: No stacktrace is posted on the server logs.

Any ideas what might be going on? Thanks!

@nathandunn
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Can you paste in the trackList.json for the section you are trying to add?

@mpoelchau
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Actually, @cmdcolin just solved the problem - I needed to add "type": "CanvasFeatures" to the trackList. All console errors disappeared, Tracks show up, styling is fine in this Jbrowse version (1.16.9). Thanks @cmdcolin!

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