README.Rmd

---
output: github_document
---

```{r, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "README-"
)
```

# PAMES
Purity Assessment from DNA MEthylation Sites

## Citation
[Benelli, M., Romagnoli, D., & Demichelis, F. (2018). Tumor purity quantification by clonal DNA methylation signatures. Bioinformatics.](https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bioinformatics/bty011/4792963?redirectedFrom=fulltext)

## Installation

You can install PAMES from github with:

```{r gh-installation, eval = FALSE}
# install.packages("devtools")
devtools::install_github("cgplab/PAMES")
```
To include vignette use:
```{r eval = FALSE}
# install.packages("devtools")
devtools::install_github("cgplab/PAMES", build_vignettes = T)
```