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CellProfiler-plugins

A home for community-contributed and experimental CellProfiler modules.

Use

  1. Clone this repository:

    cd PLUGIN_DIRECTORY
git clone https://github.com/CellProfiler/CellProfiler-plugins.git

  2. Configure CellProfiler plugins directory in the GUI via Preferences > CellProfiler plugins directory (you will need to restart CellProfiler for the change to take effect). When running CellProfiler via the command line, use the --plugins-directory flag to specify the plugins directory, for example:

    cellprofiler --run --run-headless --project PROJECT_FILE --plugins-directory PLUGIN_DIRECTORY