Introduce transfer matrix operation

Author: schnellerhase

cpp/dolfinx/CMakeLists.txt

@@ -18,6 +18,7 @@ set(DOLFINX_DIRS
     mesh
     nls
     refinement
+    transfer
 )
 
 # Add source to dolfinx target, and get sets of header files

cpp/dolfinx/transfer/CMakeLists.txt

@@ -0,0 +1,4 @@
+set(HEADERS_transfer
+    ${CMAKE_CURRENT_SOURCE_DIR}/transfer_matrix.h
+    PARENT_SCOPE
+)

cpp/dolfinx/transfer/transfer_matrix.h

@@ -0,0 +1,236 @@
+// Copyright (C) 2024 Paul T. Kühner
+//
+// This file is part of DOLFINX (https://www.fenicsproject.org)
+//
+// SPDX-License-Identifier:    LGPL-3.0-or-later
+
+#pragma once
+
+#include <algorithm>
+#include <concepts>
+#include <cstdint>
+#include <iterator>
+#include <vector>
+
+#include "dolfinx/common/IndexMap.h"
+#include "dolfinx/fem/FunctionSpace.h"
+#include "dolfinx/la/SparsityPattern.h"
+#include "dolfinx/la/utils.h"
+#include "dolfinx/mesh/Mesh.h"
+
+namespace dolfinx::transfer
+{
+
+template <std::floating_point T>
+std::vector<std::int64_t>
+inclusion_mapping(const dolfinx::mesh::Mesh<T>& mesh_from,
+                  const dolfinx::mesh::Mesh<T>& mesh_to)
+{
+
+  const common::IndexMap& im_from = *mesh_from.topology()->index_map(0);
+  const common::IndexMap& im_to = *mesh_to.topology()->index_map(0);
+
+  std::vector<std::int64_t> map(im_from.size_global(), -1);
+
+  std::span<const T> x_from = mesh_from.geometry().x();
+  std::span<const T> x_to = mesh_to.geometry().x();
+
+  auto build_global_to_local = [&](const auto& im)
+  {
+    return [&](std::int32_t idx)
+    {
+      std::array<std::int64_t, 1> tmp;
+      im.local_to_global(std::vector<std::int32_t>{idx}, tmp);
+      return tmp[0];
+    };
+  };
+
+  auto to_global_to = build_global_to_local(im_to);
+  auto to_global_from = build_global_to_local(im_from);
+
+  for (std::int32_t i = 0; i < im_from.size_local(); i++)
+  {
+    std::ranges::subrange vertex_from(std::next(x_from.begin(), 3 * i),
+                                      std::next(x_from.begin(), 3 * (i + 1)));
+    for (std::int64_t j = 0; j < im_to.size_local() + im_to.num_ghosts(); j++)
+    {
+      std::ranges::subrange vertex_to(std::next(x_to.begin(), 3 * j),
+                                      std::next(x_to.begin(), 3 * (j + 1)));
+
+      if (std::ranges::equal(
+              vertex_from, vertex_to, [](T a, T b)
+              { return std::abs(a - b) <= std::numeric_limits<T>::epsilon(); }))
+      {
+        map[to_global_from(i)] = to_global_to(j);
+        break;
+      }
+    }
+  }
+
+  if (dolfinx::MPI::size(mesh_to.comm()) == 1)
+  {
+    // no communication required
+    assert(std::ranges::all_of(map, [](auto e) { return e >= 0; }));
+    return map;
+  }
+
+  // map holds at this point for every original local index the corresponding
+  // mapped global index. All other entries are still -1, but are available on
+  // other processes.
+  std::vector<std::int64_t> result(map.size(), -1);
+  MPI_Allreduce(map.data(), result.data(), map.size(),
+                dolfinx::MPI::mpi_type<std::int64_t>(), MPI_MAX,
+                mesh_from.comm());
+
+  assert(std::ranges::all_of(result, [](auto e) { return e >= 0; }));
+  return result;
+}
+
+template <std::floating_point T>
+la::SparsityPattern
+create_sparsity_pattern(const dolfinx::fem::FunctionSpace<T>& V_from,
+                        const dolfinx::fem::FunctionSpace<T>& V_to,
+                        const std::vector<std::int64_t>& inclusion_map)
+{
+  // TODO: P1 and which elements supported?
+  auto mesh_from = V_from.mesh();
+  auto mesh_to = V_to.mesh();
+  assert(mesh_from);
+  assert(mesh_to);
+
+  MPI_Comm comm = mesh_from->comm();
+  {
+    // Check comms equal
+    int result;
+    MPI_Comm_compare(comm, mesh_to->comm(), &result);
+    assert(result == MPI_CONGRUENT);
+  }
+  assert(mesh_from->topology()->dim() == mesh_to->topology()->dim());
+
+  auto to_v_to_f = mesh_to->topology()->connectivity(0, 1);
+  auto to_f_to_v = mesh_to->topology()->connectivity(1, 0);
+  assert(to_v_to_f);
+  assert(to_f_to_v);
+
+  auto dofmap_from = V_from.dofmap();
+  auto dofmap_to = V_to.dofmap();
+  assert(dofmap_from);
+  assert(dofmap_to);
+
+  assert(mesh_to->topology()->index_map(0));
+  assert(mesh_from->topology()->index_map(0));
+  const common::IndexMap& im_to = *mesh_to->topology()->index_map(0);
+  const common::IndexMap& im_from = *mesh_from->topology()->index_map(0);
+
+  dolfinx::la::SparsityPattern sp(
+      comm, {dofmap_from->index_map, dofmap_to->index_map},
+      {dofmap_from->index_map_bs(), dofmap_to->index_map_bs()});
+
+  assert(inclusion_map.size() == im_from.size_global());
+  for (int dof_from_global = 0; dof_from_global < im_from.size_global();
+       dof_from_global++)
+  {
+    std::int64_t dof_to_global = inclusion_map[dof_from_global];
+
+    std::vector<std::int32_t> local_dof_to_v{0};
+    im_to.global_to_local(std::vector<std::int64_t>{dof_to_global},
+                          local_dof_to_v);
+
+    auto local_dof_to = local_dof_to_v[0];
+
+    bool is_remote = (local_dof_to == -1);
+    bool is_ghost = local_dof_to >= im_to.size_local();
+    if (is_remote || is_ghost)
+      continue;
+
+    std::vector<std::int32_t> dof_from_v{0};
+    im_from.global_to_local(std::vector<std::int64_t>{dof_from_global},
+                            dof_from_v);
+
+    std::ranges::for_each(
+        to_v_to_f->links(local_dof_to),
+        [&](auto e)
+        {
+          sp.insert(
+              std::vector<int32_t>(to_f_to_v->links(e).size(), dof_from_v[0]),
+              to_f_to_v->links(e));
+        });
+  }
+  sp.finalize();
+  return sp;
+}
+
+template <std::floating_point T>
+void assemble_transfer_matrix(la::MatSet<T> auto mat_set,
+                              const dolfinx::fem::FunctionSpace<T>& V_from,
+                              const dolfinx::fem::FunctionSpace<T>& V_to,
+                              const std::vector<std::int64_t>& inclusion_map,
+                              std::function<T(std::int32_t)> weight)
+{
+  // TODO: P1 and which elements supported?
+  auto mesh_from = V_from.mesh();
+  auto mesh_to = V_to.mesh();
+  assert(mesh_from);
+  assert(mesh_to);
+
+  MPI_Comm comm = mesh_from->comm();
+  {
+    // Check comms equal
+    int result;
+    MPI_Comm_compare(comm, mesh_to->comm(), &result);
+    assert(result == MPI_CONGRUENT);
+  }
+  assert(mesh_from->topology()->dim() == mesh_to->topology()->dim());
+
+  auto to_v_to_f = mesh_to->topology()->connectivity(0, 1);
+  auto to_f_to_v = mesh_to->topology()->connectivity(1, 0);
+  assert(to_v_to_f);
+  assert(to_f_to_v);
+
+  auto dofmap_from = V_from.dofmap();
+  auto dofmap_to = V_to.dofmap();
+  assert(dofmap_from);
+  assert(dofmap_to);
+
+  assert(mesh_to->topology()->index_map(0));
+  assert(mesh_from->topology()->index_map(0));
+  const common::IndexMap& im_to = *mesh_to->topology()->index_map(0);
+  const common::IndexMap& im_from = *mesh_from->topology()->index_map(0);
+
+  assert(inclusion_map.size() == im_from.size_global());
+
+  for (int dof_from_global = 0; dof_from_global < im_from.size_global();
+       dof_from_global++)
+  {
+    std::int64_t dof_to_global = inclusion_map[dof_from_global];
+
+    std::vector<std::int32_t> local_dof_to_v{0};
+    im_to.global_to_local(std::vector<std::int64_t>{dof_to_global},
+                          local_dof_to_v);
+
+    auto local_dof_to = local_dof_to_v[0];
+
+    bool is_remote = (local_dof_to == -1);
+    bool is_ghost = local_dof_to >= im_to.size_local();
+    if (is_remote || is_ghost)
+      continue;
+
+    std::vector<std::int32_t> dof_from_v{0};
+    im_from.global_to_local(std::vector<std::int64_t>{dof_from_global},
+                            dof_from_v);
+
+    for (auto e : to_v_to_f->links(local_dof_to))
+    {
+      for (auto n : to_f_to_v->links(e))
+      {
+        // For now we only support distance <= 1 -> this should be somehow
+        // asserted.
+        std::int32_t distance = (n == local_dof_to) ? 0 : 1;
+        mat_set(std::vector<int32_t>{dof_from_v[0]}, std::vector<int32_t>{n},
+                std::vector<double>{weight(distance)});
+      }
+    }
+  }
+}
+
+} // namespace dolfinx::transfer

cpp/test/CMakeLists.txt

@@ -47,6 +47,7 @@ add_executable(
   mesh/refinement/interval.cpp
   mesh/refinement/option.cpp
   mesh/refinement/rectangle.cpp
+  transfer/transfer_matrix.cpp
   ${CMAKE_CURRENT_BINARY_DIR}/poisson.c
 )
 target_link_libraries(unittests PRIVATE Catch2::Catch2WithMain dolfinx)