Fix documentation

Author: RyanJField

Doxyfile

@@ -44,7 +44,7 @@ PROJECT_NUMBER         = 0.3.0
 # for a project that appears at the top of each page and should give viewer a
 # quick idea about the purpose of the project. Keep the description short.
 
-PROJECT_BRIEF          = "C++ Implementation of the Scottish COVID Response Consortium FAIR Data Pipeline"
+PROJECT_BRIEF          = "C++ Implementation of the FAIR Data Pipeline API"
 
 # With the PROJECT_LOGO tag one can specify a logo or an icon that is included
 # in the documentation. The maximum height of the logo should not exceed 55
@@ -874,7 +874,9 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  =
+INPUT                  = src \
+                         include \
+                         README.md
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -954,7 +956,7 @@ FILE_PATTERNS          = *.c \
 # be searched for input files as well.
 # The default value is: NO.
 
-RECURSIVE              = NO
+RECURSIVE              = YES
 
 # The EXCLUDE tag can be used to specify files and/or directories that should be
 # excluded from the INPUT source files. This way you can easily exclude a
@@ -1072,7 +1074,7 @@ FILTER_SOURCE_PATTERNS =
 # (index.html). This can be useful if you have a project on for instance GitHub
 # and want to reuse the introduction page also for the doxygen output.
 
-USE_MDFILE_AS_MAINPAGE =
+USE_MDFILE_AS_MAINPAGE = README.md
 
 #---------------------------------------------------------------------------
 # Configuration options related to source browsing

docs/.gitignore

@@ -0,0 +1,2 @@
+html/
+latex/

include/fdp/fdp.hxx

@@ -1,6 +1,11 @@
 #include "fdp/registry/datapipeline.hxx"
 
 namespace FDP {
+/**
+ * @brief DataPipeline Class:
+ * A PIMPL Class for interacting the the FAIR Data Pipeline
+ * 
+ */
 class DataPipeline {
 public:
   /**