Skip to content
This repository was archived by the owner on May 27, 2022. It is now read-only.

Latest commit

 

History

History
25 lines (18 loc) · 1.24 KB

datapipeline.md

File metadata and controls

25 lines (18 loc) · 1.24 KB

Data pipeline

  • Code for interfacing with pipeline being written by Ian Hinder.

    • He is currently on holiday so I haven't been able to get the latest information on data pipeline.

  • C++ code either reads files locally or through the pipeline (by means of Python).

    • As far as I know reading is possible, but an implementation of writing files to the pipeline is not yet finished.

  • Richard Bailey is the data broker for BEEPmbp model.

    • As of the end of July he has placed some data files into the data pipeline.
    • At that point he found the procedure rather difficult.
    • He thought it would be better to have some way to automate the whole thing in R.

  • BEEPmbp currently uses the following datasets:

    • Hospitalisations per day on a national level

    • Hospital occupancy per week on a healthboard level

    • Hospilatised deaths per week on a national level

    • Community deaths per week on a national level

    • Total deaths per week on a healthboard level

    • Matrix of MSOA interactions gained from census flow data (Stephen Caterall)

    • Age mixing matrices from Prem et al. paper

    • Unofficial priors for latent and infectious periods and asymptomatic fraction (it would be better if there is a more official version in the pipeline?).