publications.bib

@article{jerbi2013decoding,
  title={Decoding cognitive states and motor intentions from intracranial EEG: How promising is high-frequency brain activity for brain-machine interfaces?},
  author={Jerbi, Karim and Combrisson, Etienne and Dalal, Sarang S and Vidal, Juan R and Hamame, Carlos M and Bertrand, Olivier and Berthoz, Alain and Kahane, Philippe and Lachaux, Jean-Philippe},
  journal={Epilepsy \& Behavior},
  volume={28},
  number={2},
  pages={283--302},
  year={2013}
}

@article{combrisson2015exceeding,
  title={Exceeding chance level by chance: The caveat of theoretical chance levels in brain signal classification and statistical assessment of decoding accuracy},
  author={Combrisson, Etienne and Jerbi, Karim},
  journal={Journal of neuroscience methods},
  volume={250},
  pages={126--136},
  year={2015},
  publisher={Elsevier}
}

@article{bastin2016direct,
  title={Direct recordings from human anterior insula reveal its leading role within the error-monitoring network},
  author={Bastin, Julien and Deman, Pierre and David, Olivier and Gueguen, Ma{\"e}lle and Benis, Damien and Minotti, Lorella and Hoffman, Dominique and Combrisson, Etienne and Kujala, Jan and Perrone-Bertolotti, Marcela and others},
  journal={Cerebral cortex},
  pages={bhv352},
  year={2016},
  publisher={Oxford University Press}
}

@article{combrisson2017intentions,
  title={From intentions to actions: Neural oscillations encode motor processes through phase, amplitude and phase-amplitude coupling},
  author={Combrisson, Etienne and Perrone-Bertolotti, Marcela and Soto, Juan LP and Alamian, Golnoush and Kahane, Philippe and Lachaux, Jean-Philippe and Guillot, Aymeric and Jerbi, Karim},
  journal={NeuroImage},
  volume={147},
  pages={473--487},
  year={2017},
  publisher={Academic Press}
}

@article{lajnef2017meet,
  title={Meet spinky: an open-source spindle and K-complex detection toolbox validated on the open-access montreal archive of sleep studies (MASS)},
  author={Lajnef, Tarek and O’Reilly, Christian and Combrisson, Etienne and Chaibi, Sahbi and Eichenlaub, Jean-Baptiste and Ruby, Perrine M and Aguera, Pierre-Emmanuel and Samet, Mounir and Kachouri, Abdennaceur and Frenette, Sonia and others},
  journal={Frontiers in Neuroinformatics},
  volume={11},
  pages={15},
  year={2017},
  publisher={Frontiers Media SA}
}

@article{alamian2017alterations,
  title={Alterations of intrinsic brain connectivity patterns in depression and bipolar disorders: a critical assessment of magnetoencephalography-based evidence},
  author={Alamian, Golnoush and Hincapi{\'e}, Ana-Sof{\'\i}a and Combrisson, Etienne and Thiery, Thomas and Martel, V{\'e}ronique and Althukov, Dmitrii and Jerbi, Karim},
  journal={Frontiers in Psychiatry},
  volume={8},
  pages={41},
  year={2017},
  publisher={Frontiers Media SA}
}

@article{alamian2017measuring,
  title={Measuring alterations in oscillatory brain networks in schizophrenia with resting-state MEG: State-of-the-art and methodological challenges},
  author={Alamian, Golnoush and Hincapi{\'e}, Ana-Sof{\'\i}a and Pascarella, Annalisa and Thiery, Thomas and Combrisson, Etienne and Saive, Anne-Lise and Martel, V{\'e}ronique and Althukov, Dmitrii and Haesebaert, Fr{\'e}d{\'e}ric and Jerbi, Karim},
  journal={Clinical Neurophysiology},
  volume={128},
  number={9},
  pages={1719--1736},
  year={2017},
  publisher={Elsevier}
}

@article{combrisson2017sleep,
  title={Sleep: an open-source python software for visualization, analysis, and staging of sleep data},
  author={Combrisson, Etienne and Vallat, Raphael and Eichenlaub, Jean-Baptiste and O'Reilly, Christian and Lajnef, Tarek and Guillot, Aymeric and Ruby, Perrine M and Jerbi, Karim},
  journal={Frontiers in neuroinformatics},
  volume={11},
  pages={60},
  year={2017},
  publisher={Frontiers}
}

@article{lajnefmeasuring,
  title={Measuring interactions between thalamus, hippocampus and cortex during sleep spindles: Combining MEG and machine learning},
  author={Lajnef, T and Pascarella, A and Dub{\'e}, J and Combrisson, E and Jerbi, K and Carrier, J and Lina, JM}
}

@phdthesis{combrisson2017decodage,
  title={D{\'e}codage des intentions et des ex{\'e}cutions motrices: {\'e}tude du r{\^o}le des oscillations c{\'e}r{\'e}brales via l’apprentissage machine et d{\'e}veloppement d’outils open-source},
  author={Combrisson, Etienne},
  year={2017},
  school={Universit{\'e} de Lyon}
}

@article{thiery2018long,
  title={Long-range temporal correlations in the brain distinguish conscious wakefulness from induced unconsciousness},
  author={Thiery, Thomas and Lajnef, Tarek and Combrisson, Etienne and Dehgan, Arthur and Rainville, Pierre and Mashour, George A and Blain-Moraes, Stefanie and Jerbi, Karim},
  journal={Neuroimage},
  volume={179},
  pages={30--39},
  year={2018},
  publisher={Academic Press}
}

@article{soto2018estimation,
  title={Estimation of narrowband amplitude and phase from electrophysiology signals for phase-amplitude coupling studies: a comparison of methods},
  author={Soto, Juan LP and Prado, Felipe VD and Combrisson, Etienne and Jerbi, Karim},
  journal={bioRxiv},
  pages={392886},
  year={2018},
  publisher={Cold Spring Harbor Laboratory}
}

@article{combrisson2019visbrain,
  title={Visbrain: a multi-purpose GPU-accelerated open-source suite for multimodal brain data visualization},
  author={Combrisson, Etienne and Vallat, Raphael and O'Reilly, Christian and Jas, Mainak and Pascarella, Annalisa and Saive, Anne-lise and Thiery, Thomas and Meunier, David and Altukhov, Dmitrii and Lajnef, Tarek and others},
  journal={Frontiers in Neuroinformatics},
  volume={13},
  pages={14},
  year={2019},
  publisher={Frontiers Media SA}
}

@article{thiery2020decoding,
  title={Decoding the neural dynamics of free choice in humans},
  author={Thiery, Thomas and Saive, Anne-Lise and Combrisson, Etienne and Dehgan, Arthur and Bastin, Julien and Kahane, Philippe and Berthoz, Alain and Lachaux, Jean-Philippe and Jerbi, Karim},
  journal={PLoS biology},
  volume={18},
  number={12},
  pages={e3000864},
  year={2020},
  publisher={Public Library of Science San Francisco, CA USA}
}

@article{meunier2020neuropycon,
  title={NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines},
  author={Meunier, David and Pascarella, Annalisa and Altukhov, Dmitrii and Jas, Mainak and Combrisson, Etienne and Lajnef, Tarek and Bertrand-Dubois, Daphn{\'e} and Hadid, Vanessa and Alamian, Golnoush and Alves, Jordan and others},
  journal={NeuroImage},
  volume={219},
  pages={117020},
  year={2020},
  publisher={Academic Press}
}

@article{combrisson2020tensorpac,
  title={Tensorpac: An open-source Python toolbox for tensor-based phase-amplitude coupling measurement in electrophysiological brain signals},
  author={Combrisson, Etienne and Nest, Timothy and Brovelli, Andrea and Ince, Robin AA and Soto, Juan LP and Guillot, Aymeric and Jerbi, Karim},
  journal={PLoS computational biology},
  volume={16},
  number={10},
  pages={e1008302},
  year={2020},
  publisher={Public Library of Science San Francisco, CA USA}
}

@article{degoulet2021subthalamic,
  title={Subthalamic low-frequency oscillations predict vulnerability to cocaine addiction},
  author={Degoulet, Mickael and Tiran-Cappello, Alix and Combrisson, Etienne and Baunez, Christelle and Pelloux, Yann},
  journal={Proceedings of the National Academy of Sciences},
  volume={118},
  number={14},
  pages={e2024121118},
  year={2021},
  publisher={National Academy of Sciences}
}

@article{gau2021brainhack,
  title={Brainhack: Developing a culture of open, inclusive, community-driven neuroscience},
  author={Gau, R{\'e}mi and Noble, Stephanie and Heuer, Katja and Bottenhorn, Katherine L and Bilgin, Isil P and Yang, Yu-Fang and Huntenburg, Julia M and Bayer, Johanna MM and Bethlehem, Richard AI and Rhoads, Shawn A and others},
  journal={Neuron},
  volume={109},
  number={11},
  pages={1769--1775},
  year={2021},
  publisher={Elsevier}
}

@article{soto2015estimation,
  title={Estimation of narrowband amplitude and phase from electrophysiology signals for},
  author={Soto, Juan LP and Prado, Felipe VD and Combrisson, Etienne and Jerbi, Karim},
  journal={Journal of the American Society of Anesthesiologists},
  volume={122},
  number={2},
  pages={307--316},
  year={2015}
}

@article{combrisson2022group,
  title={Group-level inference of information-based measures for the analyses of cognitive brain networks from neurophysiological data},
  author={Combrisson, Etienne and Allegra, Michele and Basanisi, Ruggero and Ince, Robin AA and Giordano, Bruno L and Bastin, Julien and Brovelli, Andrea},
  journal={NeuroImage},
  volume={258},
  pages={119347},
  year={2022},
  publisher={Academic Press}
}

@article{niso2022good,
  title={Good scientific practice in EEG and MEG research: Progress and perspectives},
  author={Niso, Guiomar and Krol, Laurens R and Combrisson, Etienne and Dubarry, A Sophie and Elliott, Madison A and Fran{\c{c}}ois, Cl{\'e}ment and H{\'e}jja-Brichard, Yseult and Herbst, Sophie K and Jerbi, Karim and Kovic, Vanja and others},
  journal={NeuroImage},
  volume={257},
  pages={119056},
  year={2022},
  publisher={Academic Press}
}

@article{tholke2023class,
  title={Class imbalance should not throw you off balance: Choosing the right classifiers and performance metrics for brain decoding with imbalanced data},
  author={Th{\"o}lke, Philipp and Mantilla-Ramos, Yorguin-Jose and Abdelhedi, Hamza and Maschke, Charlotte and Dehgan, Arthur and Harel, Yann and Kemtur, Anirudha and Berrada, Loubna Mekki and Sahraoui, Myriam and Young, Tammy and others},
  journal={NeuroImage},
  volume={277},
  pages={120253},
  year={2023},
  publisher={Academic Press}
}

@article{laverne2022cholinergic,
  title={Cholinergic interneuron inhibition potentiates corticostriatal transmission in direct medium spiny neurons and rescues motor learning in parkinsonism},
  author={Laverne, Gwena{\"e}lle and Pesce, Jonathan and Reynders, Ana and Combrisson, Etienne and Gascon, Eduardo and Melon, Christophe and Kerkerian-Le Goff, Lydia and Maurice, Nicolas and Beurrier, Corinne},
  journal={Cell Reports},
  volume={40},
  number={1},
  year={2022},
  publisher={Elsevier}
}

@article{combrisson2022frites,
  title={Frites: A Python package for functional connectivity analysis and group-level statistics of neurophysiological data},
  author={Combrisson, Etienne and Basanisi, Ruggero and Cordeiro, Vinicius Lima and Ince, Robin AA and Brovelli, Andrea},
  journal={Journal of Open Source Software},
  volume={7},
  number={79},
  pages={3842},
  year={2022}
}

@article{basanisi2023beta,
  title={Beta oscillations in monkey striatum encode reward prediction error signals},
  author={Basanisi, Ruggero and Marche, Kevin and Combrisson, Etienne and Apicella, Paul and Brovelli, Andrea},
  journal={Journal of Neuroscience},
  volume={43},
  number={18},
  pages={3339--3352},
  year={2023},
  publisher={Society for Neuroscience}
}

@article{combrisson2023neural,
  title={Neural interactions in the human frontal cortex dissociate reward and punishment learning},
  author={Combrisson, Etienne and Basanisi, Ruggero and Gueguen, Maelle and Rheims, Sylvain and Kahane, Philippe and Bastin, Julien and Brovelli, Andrea},
  journal={bioRxiv},
  pages={2023--05},
  year={2023},
  publisher={Cold Spring Harbor Laboratory}
}

@article{combrisson2024human,
  title={Human local field potentials in motor and non-motor brain areas encode upcoming movement direction},
  author={Combrisson, Etienne and Di Rienzo, Franck and Saive, Anne-Lise and Perrone-Bertolotti, Marcela and Soto, Juan LP and Kahane, Philippe and Lachaux, Jean-Philippe and Guillot, Aymeric and Jerbi, Karim},
  journal={Communications Biology},
  volume={7},
  number={1},
  pages={506},
  year={2024},
  publisher={Nature Publishing Group UK London}
}