dontrun heavy examples

Author: Florian Schneider

R/as.traitdata.R

@@ -70,9 +70,10 @@
 #' @importFrom reshape2 melt
 #'
 #' @examples
-#'
+#' 
+#' \dontrun{
 #' # species-trait matrix:
-#'
+#' 
 #' pulldata("carabids")
 #'
 #' dataset1 <- as.traitdata(carabids,
@@ -83,7 +84,7 @@
 #'   )
 #'
 #' # occurrence table:
-#'
+#' 
 #' pulldata("heteroptera_raw")
 #'
 #' dataset2 <- as.traitdata(heteroptera_raw,
@@ -103,7 +104,7 @@
 #'     license = "http://creativecommons.org/publicdomain/zero/1.0/"
 #'     )
 #' )
-#'
+#' }
 #' 
 
 as.traitdata <- function(x, 

R/mutate.traitdata.R

@@ -33,7 +33,8 @@
 #' @importFrom plyr rbind.fill
 #'
 #' @examples
-#'
+#' 
+#' \dontrun{
 #' pulldata("arthropodtraits")
 #' dataset3 <- as.traitdata(arthropodtraits,
 #'                          taxa = "SpeciesID",
@@ -56,7 +57,7 @@
 #' head(updated[updated$traitName == "predator",])
 #'
 #' levels(updated$traitName)
-#'
+#' }
 #'
 #' ##
 #'

R/standardize.R

@@ -42,7 +42,9 @@
 #'
 #'
 #' @examples
-#'
+#' 
+#' \dontrun{
+#' 
 #' pulldata("carabids")
 #'
 #' dataset1 <- as.traitdata(carabids,
@@ -56,9 +58,9 @@
 #'     license = "http://creativecommons.org/publicdomain/zero/1.0/"
 #'     )
 #' )
-#'
-#' dataset1Std <- standardize_taxa(dataset1)
 #' 
+#' dataset1Std <- standardize_taxa(dataset1)
+#' }
 standardize_taxa <- function(x, 
                                  method = get_gbif_taxonomy, 
                                  method_options = c(subspecies = TRUE, 

R/thesaurus.R

@@ -52,12 +52,14 @@
 #' # provide traitlist from remote archive with renaming  
 #' # (pulls from https://github.com/EcologicalTraitData/TraitDataList)
 #' 
+#' \dontrun{
 #' traits1 <- as.thesaurus(read.csv("https://git.io/fpsj5"), 
 #'                    replace = c(traitID = "identifier", 
 #'                                   traitName = "trait",
 #'                                   traitUnit = "expectedUnit",
 #'                                   Comments = "comments") 
 #' )
+#' }
 
 as.thesaurus <- function(...,
                          replace = NULL