FILTER_REPEAT:MAKEBLASTDB failure

[Antonio-Longo]

Dear all,

I've been trying the pipeline with the following command:

nextflow run main.nf --genome /path/to/genome.fa --species xxx -profile local,singularity --max_cpus 30 --max_cores 30 --publish_dir_mode symlink --outdir /path/to/outdir --rnaseq /path/to/rnaseq.csv --protein /path/to/proteins.fasta

Without the protein flag the pipeline is working, adding the protein.fasta it seems to get stuck:

[cc/3ca45e] process > ANNOTATO:GENOME_MASKING:FILTER_REPEAT:MAKEBLASTDB (1) [100%] 1 of 1, failed: 1 ✘

here the .log file
nextflow_log.txt

Thanks again for your help!