Fix to eggnog tuples

Author: tgurbich

subworkflows/annotate_eukaryotes.nf

@@ -22,15 +22,15 @@ workflow ANNOTATE_EUKARYOTES {
 
         EGGNOG_MAPPER_ORTHOLOGS_PER_GENOME(
             cluster_reps_faas,
-            tuple("empty", "NO_FILE"),
+            cluster_reps_faas.map { tuple(it[0], "NO_FILE") },  // use the cluster rep names in position 0 of tuple to have correct names
             channel.value('mapper'),
             eggnog_db,
             eggnog_diamond_db,
             eggnog_data_dir
         )
 
         EGGNOG_MAPPER_ANNOTATIONS_PER_GENOME(
-            tuple("empty", "NO_FILE"),
+            cluster_reps_faas.map { tuple(it[0], "NO_FILE") },  // use the cluster rep names in position 0 of tuple to have correct names
             EGGNOG_MAPPER_ORTHOLOGS_PER_GENOME.out.orthologs,
             channel.value('annotations'),
             eggnog_db,