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This seems a little tricky to do in general, since we don't know anything about the dependency's build system. I guess one option would be to try calling make in that directory at configure time.
It would be better if we could instead inform coq_makefile of the dependency's Makefile, so that things would automatically get rebuilt.
It would be convenient to allow coqproject.sh to run make when configuring the project on dependencies if they have not been built.
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