From ae00fba8ef87efd54a70e552ed8cc87064b84e44 Mon Sep 17 00:00:00 2001
From: stxue1 <stxue@ucsc.edu>
Date: Tue, 26 Nov 2024 14:23:17 -0800
Subject: [PATCH] Fix bug with importing tool associated files

---
 src/toil/cwl/cwltoil.py | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/src/toil/cwl/cwltoil.py b/src/toil/cwl/cwltoil.py
index 233d06e15b..8d15b60f74 100644
--- a/src/toil/cwl/cwltoil.py
+++ b/src/toil/cwl/cwltoil.py
@@ -3776,7 +3776,7 @@ def file_import_function(url: str) -> FileID:
         tool,
         functools.partial(
             visit_files,
-            import_function,
+            tool_import_function,
             fs_access,
             fileindex,
             existing,
@@ -3818,10 +3818,11 @@ def visitSteps(
         # All CWL Process objects (including CommandLineTool) will have tools
         # if they bothered to run the Process __init__.
         return op(cmdline_tool.tool)
-    raise RuntimeError(
-        f"Unsupported type encountered in workflow "
-        f"traversal: {type(cmdline_tool)}"
-    )
+    else:
+        raise RuntimeError(
+            f"Unsupported type encountered in workflow "
+            f"traversal: {type(cmdline_tool)}"
+        )