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Fran McDadeFran McDade
Fran McDade
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Fran McDade
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feat: add organoid-brain to atlases page (#2443)
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-22
lines changed

7 files changed

+431
-22
lines changed

‎next/@types/network.ts

+1-1
Original file line numberDiff line numberDiff line change
@@ -149,7 +149,7 @@ export interface NetworkContext {
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export interface AtlasModule {
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Description: ElementType;
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Inclusion: ElementType;
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Inclusion?: ElementType;
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}
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export interface NetworkModule {

‎next/components/HCABioNetworks/Network/Atlas/components/Overview/components/MainColumn/mainColumn.tsx

+6-2
Original file line numberDiff line numberDiff line change
@@ -20,7 +20,7 @@ import { Table, Toolbar } from "../../../../../../../common/Table/table.styles";
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import { SectionText } from "../../../../../../components/Section/section.styles";
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export const MainColumn = (): JSX.Element => {
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const { Description } = useAtlasContent();
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const { Description } = useAtlasContent() || {};
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const { atlas } = useAtlas();
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const { integratedAtlases } = atlas;
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return (
@@ -31,7 +31,11 @@ export const MainColumn = (): JSX.Element => {
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<SectionContent>
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<SectionTitle title="Atlas Description" />
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<SectionText>
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<Description />
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{Description ? (
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<Description />
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) : (
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"No atlas description available."
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)}
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</SectionText>
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</SectionContent>
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</Section>

‎next/constants/datasets.ts

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@@ -69,7 +69,338 @@ export const DATASETS = {
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musculoskeletal: [],
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"nervous-system": [],
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oral: [],
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organoid: [],
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"organoid-brain": [
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Developmental excitation-inhibition imbalance underlying psychoses revealed by single-cell analyses of discordant twins-derived cerebral organoids",
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{
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doi: "10.1038/s41380-020-0844-z",
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officialHcaPublication: null,
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publicationTitle:
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"Developmental excitation-inhibition imbalance underlying psychoses revealed by single-cell analyses of discordant twins-derived cerebral organoids",
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publicationUrl: "https://doi.org/10.1038/s41380-020-0844-z",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"hESC-Derived Thalamic Organoids Form Reciprocal Projections When Fused with Cortical Organoids",
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{
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doi: "10.1016/j.stem.2018.12.015",
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officialHcaPublication: null,
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publicationTitle:
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"hESC-Derived Thalamic Organoids Form Reciprocal Projections When Fused with Cortical Organoids",
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publicationUrl: "https://doi.org/10.1016/j.stem.2018.12.015",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Generation of Functional Human 3D Cortico-Motor Assembloids",
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{
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doi: "10.1016/j.cell.2020.11.017",
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officialHcaPublication: null,
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publicationTitle:
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"Generation of Functional Human 3D Cortico-Motor Assembloids",
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publicationUrl: "https://doi.org/10.1016/j.cell.2020.11.017",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Generation of human striatal organoids and cortico-striatal assembloids from human pluripotent stem cells",
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{
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doi: "10.1038/s41587-020-00763-w",
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officialHcaPublication: null,
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publicationTitle:
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"Generation of human striatal organoids and cortico-striatal assembloids from human pluripotent stem cells",
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publicationUrl: "https://doi.org/10.1038/s41587-020-00763-w",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets",
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{
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doi: "10.15252/embj.2022111118",
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officialHcaPublication: null,
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publicationTitle:
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"Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets",
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publicationUrl: "https://doi.org/10.15252/embj.2022111118",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Midbrain_organoid_Treutlein"
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex",
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{
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doi: "10.1016/j.cell.2022.09.010",
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officialHcaPublication: null,
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publicationTitle:
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"Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex",
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publicationUrl: "https://doi.org/10.1016/j.cell.2022.09.010",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Autism genes converge on asynchronous development of shared neuron classes",
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{
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doi: "10.1038/s41586-021-04358-6",
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officialHcaPublication: null,
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publicationTitle:
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"Autism genes converge on asynchronous development of shared neuron classes",
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publicationUrl: "https://doi.org/10.1038/s41586-021-04358-6",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Generation of hypothalamic arcuate organoids from human induced pluripotent stem cells",
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{
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doi: "10.1016/j.stem.2021.04.006",
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officialHcaPublication: null,
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publicationTitle:
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"Generation of hypothalamic arcuate organoids from human induced pluripotent stem cells",
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publicationUrl: "https://doi.org/10.1016/j.stem.2021.04.006",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Individual brain organoids reproducibly form cell diversity of the human cerebral cortex",
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{
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doi: "10.1038/s41586-019-1289-x",
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officialHcaPublication: null,
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publicationTitle:
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"Individual brain organoids reproducibly form cell diversity of the human cerebral cortex",
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publicationUrl: "https://doi.org/10.1038/s41586-019-1289-x",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Human Astrocyte Maturation Captured in 3D Cerebral Cortical Spheroids Derived from Pluripotent Stem Cells",
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{
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doi: "10.1016/j.neuron.2017.07.035",
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officialHcaPublication: null,
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publicationTitle:
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"Human Astrocyte Maturation Captured in 3D Cerebral Cortical Spheroids Derived from Pluripotent Stem Cells",
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publicationUrl: "https://doi.org/10.1016/j.neuron.2017.07.035",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Cell stress in cortical organoids impairs molecular subtype specification",
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{
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doi: "10.1038/s41586-020-1962-0",
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officialHcaPublication: null,
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publicationTitle:
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"Cell stress in cortical organoids impairs molecular subtype specification",
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publicationUrl: "https://doi.org/10.1038/s41586-020-1962-0",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Differentiation and maturation of oligodendrocytes in human three-dimensional neural cultures",
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{
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doi: "10.1038/s41593-018-0316-9",
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officialHcaPublication: null,
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publicationTitle:
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"Differentiation and maturation of oligodendrocytes in human three-dimensional neural cultures",
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publicationUrl: "https://doi.org/10.1038/s41593-018-0316-9",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Human CNS barrier-forming organoids with cerebrospinal fluid production",
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{
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doi: "10.1126/science.aaz5626",
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officialHcaPublication: null,
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publicationTitle:
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"Human CNS barrier-forming organoids with cerebrospinal fluid production",
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publicationUrl: "https://doi.org/10.1126/science.aaz5626",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Assembly of functionally integrated human forebrain spheroids",
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{
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doi: "10.1038/nature22330",
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officialHcaPublication: null,
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publicationTitle:
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"Assembly of functionally integrated human forebrain spheroids",
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publicationUrl: "https://doi.org/10.1038/nature22330",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Cerebellar_organoid_Quadrato"
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Sliced Human Cortical Organoids for Modeling Distinct Cortical Layer Formation",
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{
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doi: "10.1016/j.stem.2020.02.002",
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officialHcaPublication: null,
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publicationTitle:
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"Sliced Human Cortical Organoids for Modeling Distinct Cortical Layer Formation",
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publicationUrl: "https://doi.org/10.1016/j.stem.2020.02.002",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development",
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{
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doi: "10.1016/j.stem.2019.08.002",
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officialHcaPublication: null,
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publicationTitle:
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"Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development",
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publicationUrl: "https://doi.org/10.1016/j.stem.2019.08.002",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Reliability of human cortical organoid generation",
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{
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doi: "10.1038/s41592-018-0255-0",
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officialHcaPublication: null,
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publicationTitle: "Reliability of human cortical organoid generation",
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publicationUrl: "https://doi.org/10.1038/s41592-018-0255-0",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Single-cell transcriptomics captures features of human midbrain development and dopamine neuron diversity in brain organoids",
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{
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doi: "10.1038/s41467-021-27464-5",
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officialHcaPublication: null,
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publicationTitle:
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"Single-cell transcriptomics captures features of human midbrain development and dopamine neuron diversity in brain organoids",
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publicationUrl: "https://doi.org/10.1038/s41467-021-27464-5",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Inferring and perturbing cell fate regulomes in human brain organoids",
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{
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doi: "10.1038/s41586-022-05279-8",
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officialHcaPublication: null,
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publicationTitle:
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"Inferring and perturbing cell fate regulomes in human brain organoids",
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publicationUrl: "https://doi.org/10.1038/s41586-022-05279-8",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"ELAVL4, splicing, and glutamatergic dysfunction precede neuron loss in MAPT mutation cerebral organoids",
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{
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doi: "10.1016/j.cell.2021.07.003",
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officialHcaPublication: null,
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publicationTitle:
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"ELAVL4, splicing, and glutamatergic dysfunction precede neuron loss in MAPT mutation cerebral organoids",
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publicationUrl: "https://doi.org/10.1016/j.cell.2021.07.003",
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}
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),
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buildDataset(
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["--"],
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0,
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["--"],
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["--"],
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["--"],
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"Androgens increase excitatory neurogenic potential in human brain organoids",
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{
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doi: "10.1038/s41586-021-04330-4",
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officialHcaPublication: null,
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publicationTitle:
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"Androgens increase excitatory neurogenic potential in human brain organoids",
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publicationUrl: "https://doi.org/10.1038/s41586-021-04330-4",
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}
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),
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],
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pancreas: [],
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reproduction: [],
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skin: [],

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