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Added README.md documentation for CPU only installations (#365)
* changed README.md to reflect installation options. * added setup script to demonstrate how wrapper could look for CPU installations * removed setup.sh as unnessescary for cpu only builds * Initial commit for merge_cdb method * Added indentation to make merge_cdb a class method * fixed syntax issues * more lint fixes * more lint fixes * bug fixes of merge_cdb * removed print statements * Added commentary on disk space usage of pytorch-gpu * removed merge_cdb from branch --------- Co-authored-by: adam-sutton-1992 <[email protected]>
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README.md

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@@ -38,6 +38,17 @@ To download any of these models, please [follow this link](https://uts.nlm.nih.g
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- **Paper**: [What’s in a Summary? Laying the Groundwork for Advances in Hospital-Course Summarization](https://www.aclweb.org/anthology/2021.naacl-main.382.pdf)
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- ([more...](https://github.com/CogStack/MedCAT/blob/master/media/news.md))
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## Installation
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To install the latest version of MedCAT run the following command:
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```
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pip install medcat
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```
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Normal installations of MedCAT will install torch-gpu and all relevant dependancies (such as CUDA). This can require as much as 10 GB more disk space, which isn't required for CPU only usage.
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To install the latest version of MedCAT without torch GPU support run the following command:
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```
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pip install medcat --extra_index_url https://download.pytorch.org/whl/cpu/
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```
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## Demo
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A demo application is available at [MedCAT](https://medcat.rosalind.kcl.ac.uk). This was trained on MIMIC-III and all of SNOMED-CT.
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PS: This link can take a long time to load the first time around. The machine spins up as needed and spins down when inactive.

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