Hi,
Do you have any experience in using the alignments produced by RapMap, perhaps with selective-alignment, for variant calling from RNA-seq? have you compared the results of variant calling with those produced with GSNAP/HISTA2 or another aligner used for RNA-seq data?
Looking forwards to your comments.
Kind Regards,
Hi,
Do you have any experience in using the alignments produced by RapMap, perhaps with selective-alignment, for variant calling from RNA-seq? have you compared the results of variant calling with those produced with GSNAP/HISTA2 or another aligner used for RNA-seq data?
Looking forwards to your comments.
Kind Regards,