check_progress

(export checkFLOWCELL_PATH=$(pwd);echo $checkFLOWCELL_PATH
export checkFLOWCELL=$(echo $(pwd) | cut -d "/" -f5);echo $checkFLOWCELL
for i in Sample*; do
    #echo "$i"
    export checkUNMAPPED_BAM=${checkFLOWCELL_PATH}/"$i"/uBAM/fastq_to_ubam.log
    export checkMARKADPT_BAM=${checkFLOWCELL_PATH}/"$i"/uBAM/markadapters.log 
    export checkCLEAN_BAM=${checkFLOWCELL_PATH}/"$i"/uBAM/clean_bam.log 
    printf "#######--PROGRESS "$i"--#################################################################################################\n"   
    echo "FASTQ to uBAM:"
    if [ -e ${checkUNMAPPED_BAM} ]; then
        echo "File "$i" ${checkUNMAPPED_BAM} exists."
        tail -2 ${checkUNMAPPED_BAM}
    else
        echo "File "$i" ${checkUNMAPPED_BAM} does not exist."
    fi
    printf "\n\n"
    echo "MarkAdapters:"    
    if [ -e ${checkMARKADPT_BAM} ]; then
        echo "File "$i" $checkMARKADPT_BAM} exists."
        tail -2 ${checkMARKADPT_BAM}
    else
        echo "File "$i" ${checkMARKADPT_BAM} does not exist."
    fi
    printf "\n\n"
    echo "CLEAN_BAM:"
    if [ -e ${checkCLEAN_BAM} ]; then
        echo "File "$i" ${checkCLEAN_BAM} exists."
        tail -3 ${checkCLEAN_BAM}
    else
        echo "File "$i" ${checkCLEAN_BAM} does not exist."
    fi
    printf "#######--PROGRESS "$i"--#################################################################################################"   
    printf "\n\n\n"
done)>"progress.log" 2>&1