Some setup issues on Mac

[akahles]

Hi DICAST team,

thanks for setting up this nice testing framework. I was about to check it out and ran into some problems when setting up on a Mac. I wanted to quickly report my insights from the setup process:

1. Although the setup info provides a warning that all input files should be unzipped (https://dicast.readthedocs.io/en/master/get-started/setup/input.html), the script initializing-dicast.sh just downloads the compressed files and the user is expected to unzip them manually. Maybe the script can just be extended accordingly.

2. The script initializing-dicast.sh downloads the ensembl release 105, but the current default config assumes version 104 (https://github.com/CGAT-Group/DICAST/blob/master/scripts/config.sh#L34).

3. To get the docker images to compile, I had to replace
   COPY [--chown=nobody:nogroup] ./ENTRYPOINT.sh /docker_main/ENTRYPOINT.sh
   in the Dockerfiles with
   COPY --chown=nobody:nogroup ./ENTRYPOINT.sh /docker_main/ENTRYPOINT.sh
   With this, I was able to build all images, except asgal, which I had to pull from Dockerhub.

4. For getting the GUI to run in the dicast-snakemake environment, I had to add pyqt to scripts/snakemake/dicast-snakemake.yml.

Just wanted to post here, in case others have similar issues.

Cheers,

Andre