The MATLAB subroutines in GFA (v.1.1) have been successfully tested on MATLAB® 2016a. Please refer to the GFA manuscript for more detailed information about the algorithm. Any questions regarding GFA usage can be addressed to [email protected].
Unzip the package GFA_1.1.zip to a preferred folder. Set the current working directory to GFA in MATLAB. The GFA package includes the following:
Model definitions for the network given in the GFA manuscript.
Vector containing the measurement times.
Secretion fluxes measurements of process A.
Secretion fluxes measurements of process B.
Runs GFA for either process A or B as described in the GFA manuscript.
Calls the GFA fixed point optimization and evaluates the GFA outputs.
Solves the GFA based on a fixed point iteration.
Generates plots of all GFA results.