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Merge pull request #874 from BioSchemas/biohackeu25-report
Add news item from ELIXIR BioHackathon Europe 2025 project
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layout: post
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title: "BioHackEU25 report: Mining the potential of knowledge graphs for metadata on training"
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tags:
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- BHEU2025
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- Preprint
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- BioHackrXiv
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We are pleased to announce another [BioHackrXiv](https://biohackrxiv.org) preprint from 2025. It reports on the work done during the past [BioHackathon Europe 2025](https://biohackathon-europe.org/) by the group [Mining the potential of knowledge graphs for metadata on training](https://github.com/elixir-europe/biohackathon-projects-2025/blob/main/18.md).
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Abstract:
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> Training metadata in the life‑science community is increasingly standardized through Bioschemas, yet remains fragmented and under‑utilized.
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> In this work we harvested training records from ELIXR’s TeSS platform and the Galaxy Training Network, converting them into a unified knowledge graph.
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> A dedicated pipeline parses RDF/Turtle dumps, deduplicates entries, and builds rich indexes (keyword, provider, location, date, topic) that power a Model Context Protocol (MCP) server.
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> The MCP offers live and offline search tools—including keyword, provider, location, date, topic, and SPARQL queries—enabling natural‑language access to training resources via LLM‑driven clients.
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> User‑story driven evaluations demonstrate the system’s ability to generate custom learning paths, assemble trainer profiles, and link training data to external repositories.
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> Findings highlight gaps in persistent identifiers (ORCID, ROR) and location granularity, informing recommendations for metadata providers.
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> The project showcases how knowledge‑graph‑backed metadata can enhance discoverability, interoperability, and AI‑assisted exploration of scientific training materials.
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Citation and link:
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D. Panouris, H. Gupta, V. Emonet, J. Miranda, J. Bolleman, P. Reed, F. Bacall, G. van Geest, Mining the potential of knowledge graphs for metadata on training, (2025). [doi:10.37044/osf.io/gv2ac_v1](https://doi.org/10.37044/osf.io/gv2ac_v1).

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