Docs reset (#12)

* Start reformatting, re-do 3 rosalind problems

* Some typos and additions

* try to make something that works locally and on ci

* Add workflows

* Add name to project

* try to fix build

---------

Co-authored-by: Kevin Bonham <[email protected]>

Author: kescobo

.github/ISSUE_TEMPLATE.md

@@ -0,0 +1,27 @@
+# https://documenter.juliadocs.org/stable/man/hosting/#gh-pages-Branch
+name: Doc Preview Cleanup
+
+on:
+  pull_request:
+    types: [closed]
+
+jobs:
+  doc-preview-cleanup:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout gh-pages branch
+        uses: actions/checkout@v2
+        with:
+          ref: gh-pages
+      - name: Delete preview and history + push changes
+        run: |
+            if [ -d "previews/PR$PRNUM" ]; then
+              git config user.name "Documenter.jl"
+              git config user.email "[email protected]"
+              git rm -rf "previews/PR$PRNUM"
+              git commit -m "delete preview"
+              git branch gh-pages-new $(echo "delete history" | git commit-tree HEAD^{tree})
+              git push --force origin gh-pages-new:gh-pages
+            fi
+        env:
+            PRNUM: ${{ github.event.number }}

.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,51 @@
+# Sample workflow for building and deploying a VitePress site to GitHub Pages
+#
+name: Deploy documentation
+
+on:
+  # Runs on pushes targeting the `main` branch. Change this to `master` if you're
+  # using the `master` branch as the default branch.
+  push:
+    branches:
+      -  main
+    tags: ['*']
+  pull_request:
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: write
+  pages: write
+  id-token: write
+  actions: write
+
+
+# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
+# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
+concurrency:
+  group: pages
+  cancel-in-progress: false
+
+jobs:
+  # Build job
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with: # Fetches the last commit only
+          fetch-depth: 0
+      - name: Setup Julia
+        uses: julia-actions/setup-julia@v1
+      - name: Pull Julia cache
+        uses: julia-actions/cache@v1
+      - name: Deploy
+        uses: julia-actions/julia-docdeploy@v1
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} # For authentication with SSH deploy key
+          GKSwstype: "100" # https://discourse.julialang.org/t/generation-of-documentation-fails-qt-qpa-xcb-could-not-connect-to-display/60988
+          JULIA_DEBUG: "Documenter"
+          DATADEPS_ALWAYS_ACCEPT: true

.github/workflows/DocCleanup.yml

@@ -0,0 +1,14 @@
+name: pr_comment
+on:
+  pull_request:
+    types: [opened, reopened]
+jobs:
+  pr_comment:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Create PR comment
+        if: github.event_name == 'pull_request' && github.repository == github.event.pull_request.head.repo.full_name # if this is a pull request build AND the pull request is NOT made from a fork
+        uses: thollander/actions-comment-pull-request@71efef56b184328c7ef1f213577c3a90edaa4aff
+        with:
+          message: 'Once the build has completed, you can preview your PR at this URL: https://biojulia.dev/BiojuliaDocs/previews/PR${{ github.event.number }}/'
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}