Merge pull request #246 from BioAnalyticResource/dev

Sync

Author: asherpasha

.github/workflows/bar-api.yml

@@ -13,7 +13,7 @@ jobs:
     runs-on: ubuntu-24.04
     strategy:
       matrix:
-        python-version: [3.8, 3.9, 3.10.14, 3.11, 3.12]
+        python-version: [3.9, 3.10.15, 3.11, 3.12, 3.13]
 
     services:
       redis:

requirements.txt

@@ -1,19 +1,19 @@
 aniso8601==9.0.1
-async-timeout==4.0.3
+async-timeout==5.0.1
 attrs==24.2.0
-black==24.8.0
-blinker==1.8.2
+black==24.10.0
+blinker==1.9.0
 cachelib==0.9.0
 certifi==2024.8.30
-charset-normalizer==3.3.2
+charset-normalizer==3.4.0
 click==8.1.7
-coverage==7.6.1
-Deprecated==1.2.14
+coverage==7.6.8
+Deprecated==1.2.15
 flake8==7.1.1
-Flask==3.0.3
+Flask==3.1.0
 Flask-Caching==2.3.0
 Flask-Cors==5.0.0
-Flask-Limiter==3.8.0
+Flask-Limiter==3.9.2
 flask-marshmallow==1.2.1
 flask-restx==1.3.0
 Flask-SQLAlchemy==3.1.1
@@ -24,37 +24,37 @@ iniconfig==2.0.0
 itsdangerous==2.2.0
 Jinja2==3.1.4
 jsonschema==4.23.0
-jsonschema-specifications==2023.12.1
-limits==3.13.0
+jsonschema-specifications==2024.10.1
+limits==3.14.1
 markdown-it-py==3.0.0
-MarkupSafe==2.1.5
-marshmallow==3.22.0
+MarkupSafe==3.0.2
+marshmallow==3.23.1
 mccabe==0.7.0
 mdurl==0.1.2
 mypy-extensions==1.0.0
-mysqlclient==2.2.4
+mysqlclient==2.2.6
 ordered-set==4.1.0
-packaging==24.1
+packaging==24.2
 pathspec==0.12.1
 platformdirs==4.3.6
 pluggy==1.5.0
 pycodestyle==2.12.1
 pyflakes==3.2.0
 Pygments==2.18.0
 pyrsistent==0.20.0
-pytest==8.3.3
+pytest==8.3.4
 python-dateutil==2.9.0.post0
 pytz==2024.2
-redis==5.1.0
+redis==5.2.0
 referencing==0.35.1
 requests==2.32.3
-rich==13.8.1
-rpds-py==0.20.0
-setuptools==75.1.0
+rich==13.9.4
+rpds-py==0.21.0
+setuptools==75.6.0
 six==1.16.0
-SQLAlchemy==2.0.35
+SQLAlchemy==2.0.36
 typing_extensions==4.12.2
 urllib3==2.2.3
-Werkzeug==3.0.4
-wheel==0.44.0
-wrapt==1.16.0
+Werkzeug==3.1.3
+wheel==0.45.1
+wrapt==1.17.0