From 91a7f2275b9802eff799601affcf87764188c106 Mon Sep 17 00:00:00 2001 From: Walt Shands Date: Thu, 12 Jan 2017 20:13:45 +0000 Subject: [PATCH] Set output BAM glob to *.bam to capture both BAM names from pipeline Set output BAM glob to *.bam to capture both BAM names from pipeline --- docker/rnaseq-cgl-pipeline.cwl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docker/rnaseq-cgl-pipeline.cwl b/docker/rnaseq-cgl-pipeline.cwl index ecdc1a5..7605cec 100644 --- a/docker/rnaseq-cgl-pipeline.cwl +++ b/docker/rnaseq-cgl-pipeline.cwl @@ -174,7 +174,7 @@ outputs: # items: ["null", File] items: File outputBinding: - glob: '*.sortedByCoord.md.bam' + glob: '*.bam' doc: "BAM result files RNA-seq CGL pipeline" baseCommand: ["--logDebug"]