diff --git a/docker/rnaseq-cgl-pipeline.cwl b/docker/rnaseq-cgl-pipeline.cwl index aca0107..7605cec 100644 --- a/docker/rnaseq-cgl-pipeline.cwl +++ b/docker/rnaseq-cgl-pipeline.cwl @@ -43,7 +43,7 @@ dct:creator: requirements: - class: DockerRequirement - dockerPull: "quay.io/ucsc_cgl/rnaseq-cgl-pipeline:3.0.2-1" + dockerPull: "quay.io/ucsc_cgl/rnaseq-cgl-pipeline:3.0.2-2" hints: - class: ResourceRequirement @@ -53,17 +53,11 @@ hints: description: "The process requires at least 16G of RAM and we recommend 500GB or storage." inputs: - #if no tar files are going to be input - #then use - # "sample-tar": [], - #in the parameterized JSON file sample-tar: - doc: "Absolute path(s) to sample tarballs" - type: - type: array - items: ["null", File] - inputBinding: - prefix: --sample-tar + doc: "Absolute path to sample tarball" + type: File[]? + inputBinding: + prefix: --sample-tar sample-single: doc: "Absolute path(s) to unpaired FASTQ files. FASTQ files are comma delimited. Ex: sample1,sample2,sample3,sample4"