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Add new variant callers to benchmark against #97

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5 tasks done
fnothaft opened this issue Aug 11, 2017 · 0 comments
Open
5 tasks done

Add new variant callers to benchmark against #97

fnothaft opened this issue Aug 11, 2017 · 0 comments
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enhancement

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@fnothaft
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fnothaft commented Aug 11, 2017 •
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Split out of #90.

  • Pull in FreeBayes
  • Pull in Platypus
  • Pull in 16GT
  • Pull in Strelka2
  • Pull in samtools mpileup/bcftools
@fnothaft fnothaft self-assigned this Aug 11, 2017
@fnothaft fnothaft mentioned this issue Aug 11, 2017
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fnothaft added a commit to fnothaft/toil-lib that referenced this issue Aug 14, 2017
@fnothaft
Added variant callers for benchmarking (resolves BD2KGenomics#97)
2929f96 
Added:

* FreeBayes
* Platypus
* 16GT
* Strelka
* Samtools Mpileup/BCFtools call
fnothaft added a commit to fnothaft/toil-lib that referenced this issue Aug 14, 2017
@fnothaft
Added variant callers for benchmarking (resolves BD2KGenomics#97)
e1f5bf6 
Added:

* FreeBayes
* Platypus
* 16GT
* Strelka (and Manta)
* Samtools Mpileup/BCFtools call

Also, ported over GATK3 HaplotypeCaller from toil-scripts.
fnothaft added a commit to fnothaft/toil-lib that referenced this issue Aug 15, 2017
@fnothaft
Added variant callers for benchmarking (resolves BD2KGenomics#97)
ed454b0 
Added:

* FreeBayes
* Platypus
* 16GT
* Strelka (and Manta)
* Samtools Mpileup/BCFtools call

Also, ported over GATK3 HaplotypeCaller from toil-scripts.
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