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Docker mapping -v $(pwd)/samples:/samples not specified in docs #37

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brainstorm opened this issue Jul 31, 2017 · 2 comments
Open

Docker mapping -v $(pwd)/samples:/samples not specified in docs #37

brainstorm opened this issue Jul 31, 2017 · 2 comments
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@brainstorm
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It is needed, otherwise leads to samples/normal.tar.gz file not found, etc... i.e:

docker run -it -e REDWOOD_ENDPOINT=https://storage.dcc.umccr.nopcode.org -v $(pwd)/application-redwood.properties:/dcc/dcc-redwood-client/conf/application-redwood.properties -v $(pwd):/data -v $(pwd)/three_manifest.tsv:/manifests/manifest.tsv -v $(pwd)/outputs:/outputs -v $(pwd)/samples:/samples quay.io/ucsc_cgl/core-client:1.1.1 spinnaker-upload /manifests/manifest.tsv

@kozbo
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kozbo commented Nov 3, 2017

What is the status of this task?

@caaespin
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caaespin commented Nov 7, 2017

I don't think this has been documented yet. Moving to current sprint.

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