diff --git a/NAMESPACE b/NAMESPACE index a2cdc5b..6dcb382 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -40,6 +40,7 @@ importFrom(cli,cli_h2) importFrom(cli,cli_h3) importFrom(cli,cli_inform) importFrom(cli,cli_par) +importFrom(cli,cli_progress_done) importFrom(cli,cli_progress_step) importFrom(cli,cli_progress_update) importFrom(cli,cli_rule) @@ -64,6 +65,7 @@ importFrom(dplyr,group_split) importFrom(dplyr,join_by) importFrom(dplyr,mutate) importFrom(dplyr,pull) +importFrom(dplyr,row_number) importFrom(dplyr,select) importFrom(dplyr,slice_head) importFrom(glue,glue) @@ -81,6 +83,7 @@ importFrom(lubridate,ymd_hm) importFrom(lubridate,ymd_hms) importFrom(purrr,keep) importFrom(purrr,map) +importFrom(purrr,map_dfr) importFrom(purrr,pluck) importFrom(rlang,.data) importFrom(rlang,abort) diff --git a/R/use_measurements.R b/R/use_measurements.R index a979597..d41b4fb 100644 --- a/R/use_measurements.R +++ b/R/use_measurements.R @@ -19,6 +19,7 @@ #' @importFrom rlang abort #' @importFrom rlang enquos #' @importFrom cli cli_progress_step +#' @importFrom cli cli_progress_done #' @importFrom dplyr row_number #' @importFrom purrr map_dfr #' @export @@ -55,6 +56,8 @@ use_measurements <- function( nest(measurementOrFact = c(padded_row_number, !!!fn_quos)) ) + cli_progress_done() + # Pivots each row's data to long # Adds rowwise `unit` and `type` information to each nested tibble cli_progress_step("Converting measurements to Darwin Core") @@ -75,6 +78,8 @@ use_measurements <- function( select(-column_name, -padded_row_number) )) + cli_progress_done() + # if(!is.null(result$measurementOrFact)) { # matched_cols = result |> # select(measurementOrFact) |> diff --git a/man/check_dataset.Rd b/man/check_dataset.Rd index cc1f6de..ab5df94 100644 --- a/man/check_dataset.Rd +++ b/man/check_dataset.Rd @@ -1,5 +1,5 @@ % Generated by roxygen2: do not edit by hand -% Please edit documentation in R/check_occurrences.R +% Please edit documentation in R/check_dataset.R \name{check_dataset} \alias{check_dataset} \title{Check a dataset for Darwin Core conformance} diff --git a/man/figures/corella-logo-lagoon.png b/man/figures/corella-logo-lagoon.png new file mode 100644 index 0000000..ef53691 Binary files /dev/null and b/man/figures/corella-logo-lagoon.png differ diff --git a/man/figures/logo.png b/man/figures/logo.png index ef53691..2c71ae9 100644 Binary files a/man/figures/logo.png and b/man/figures/logo.png differ diff --git a/pkgdown/favicon/apple-touch-icon.png b/pkgdown/favicon/apple-touch-icon.png index b730943..02f4efd 100644 Binary files a/pkgdown/favicon/apple-touch-icon.png and b/pkgdown/favicon/apple-touch-icon.png differ diff --git a/pkgdown/favicon/favicon-96x96.png b/pkgdown/favicon/favicon-96x96.png index 61ead0b..30f989f 100644 Binary files a/pkgdown/favicon/favicon-96x96.png and b/pkgdown/favicon/favicon-96x96.png differ diff --git a/pkgdown/favicon/favicon.ico b/pkgdown/favicon/favicon.ico index 547bc49..6ee4a08 100644 Binary files a/pkgdown/favicon/favicon.ico and b/pkgdown/favicon/favicon.ico differ diff --git a/pkgdown/favicon/favicon.svg b/pkgdown/favicon/favicon.svg index b5125df..bdadb30 100644 --- a/pkgdown/favicon/favicon.svg +++ b/pkgdown/favicon/favicon.svg @@ -1,7818 +1,3 @@ -corellacoreala.org.au