pyproject.toml

[project]
name = "cell-load"
version = "0.10.3"
description = "Dataloaders for training models on huge single-cell datasets"
readme = "README.md"
authors = [
    { name = "Abhinav Adduri", email = "abhinav.adduri@arcinstitute.org" },
    { name = "Yusuf Roohani", email = "yusuf.roohani@arcinstitute.org" },
    { name = "Noam Teyssier", email = "noam.teyssier@arcinstitute.org" },
    { name = "Rishi Verma", email = "rishi.verma@arcinstitute.org" },
    { name = "Francis Chalissery", email = "francis.chalissery@arcinstitute.org" },
    { name = "Beatrice Bevilacqua", email = "beatrice.bevilacqua@arcinstitute.org" },
]
requires-python = ">=3.10,<3.13"
dependencies = ["torch>=1.13.0", "anndata>=0.9.1", "lightning>=2.0.0", "toml>=0.10.2", "scanpy>=1.9.0"]

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[dependency-groups]
dev = ["pytest>=8.3.5", "ruff>=0.11.8"]

[project.scripts]
run_eval = "cell_load.__main__:main"
filter_on_target_knockdown = "cell_load._cli.filter_on_target_knockdown:main"

[tool.pyright]
venvPath = "."
venv = ".venv"