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Adding QC functionality based on voxel intensity distributions #54

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tknijnen opened this issue Jan 13, 2020 · 0 comments
Open

Adding QC functionality based on voxel intensity distributions #54

tknijnen opened this issue Jan 13, 2020 · 0 comments
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enhancement New feature or request

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@tknijnen
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tknijnen commented Jan 13, 2020

To identify outlier FoVs, we would like to add an additional QC metric which is based on the distribution of the intensities of voxels in the FoV for a particular channel. We want to compute:

  1. a vector with the overall distribution of intensity values (across all three dimensions) and
  2. a scalar representing the entropy of this distribution.

Outliers can then be detected by comparing this vector and/or this scalar across a group of FoV, and calculate which ones are far away from the bulk of FoVs.

@tknijnen tknijnen added the enhancement New feature or request label Jan 13, 2020
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